He was educated privately, partly on account of the delicacy of his health, and partly that he might act as amanuensis to his father, who had lost his sight. After his father's death, he entered at Clare College, Cambridge, where he applied himself to mathematical study, and obtained a fellowship in 1693. He next became chaplain to John Moore (1646-1714), the learned bishop of Ely, from whom he received the living of Lowestoft in 1698.
His A New Theory of the Earth (1696), an articulation of Creationism and flood geology which held that the global flood of Noah had been caused by a comet, obtained the praise of both Newton and Locke, the latter of whom classed the author among those who, if not adding much to our knowledge, "At least bring some new things to our thoughts." In 1701 he resigned his living to become deputy at Cambridge to Sir Isaac Newton, whom two years later he succeeded as Lucasian professor of mathematics. Here he engaged in joint research with his junior colleague Roger Cotes, appointed with Whiston's patronage to the Plumian chair of Astronomy in 1706.
In 1707 he was Boyle lecturer. For several years Whiston continued to write and preach both on mathematical and theological subjects with considerable success; but his study of the Apostolic Constitutions had convinced him that Arianism was the creed of the primitive church. For Whiston, to form an opinion and to publish it were things almost simultaneous. His heterodoxy soon became notorious, and in 1710 he was deprived of his professorship and expelled from the university. The rest of his life was spent in incessant controversy--theological, mathematical, chronological, and miscellaneous. He vindicated his estimate of the Apostolical Constitutions and the Arian views he had derived from them in his Primitive Christianity Revived (5 vols., 1711-1712).
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